Packages for Debian GNU/Linux 9.0 (stretch)

afni

• afni (toolkit for analyzing and visualizing functional MRI data)

• afni-common (miscellaneous scripts and data files for AFNI)

• afni-dbg (debug symbols for AFNI)

• afni-dev (header and static libraries for AFNI plugin development)

afni-data

• afni-atlases (standard space brain atlases for AFNI)

aghermann

• aghermann (Sleep-research experiment manager)

annexremote

• python3-annexremote (abstraction for git-annex special remote implementations)

ants

• ants (advanced normalization tools for brain and image analysis)

asciidoctor

• asciidoctor (AsciiDoc to HTML rendering for Ruby)

• asciidoctor-doc (AsciiDoc to HTML rendering for Ruby (documentation))

• ruby-asciidoctor (AsciiDoc to HTML rendering for Ruby (core libraries))

bats

• bats (bash automated testing system)

biosig4c++

• biosig-tools (format conversion tools for biomedical data formats)

• libbiosig-dev (I/O library for biomedical data - development files)

• libbiosig1 (I/O library for biomedical data - dynamic library)

• libbiosig1-dbg (I/O library for biomedical data - debug symbols)

• octave-biosig (Octave bindings for BioSig library)

• python-biosig (Python bindings for BioSig library)

brian

• python-brian (simulator for spiking neural networks)

• python-brian-doc (simulator for spiking neural networks - documentation)

• python-brian-lib (simulator for spiking neural networks – extensions)

btrbk

• btrbk (backup tool for btrfs subvolumes)

btrfs-tools

• btrfs-tools (Checksumming Copy on Write Filesystem utilities)

• btrfs-tools-dbg (Checksumming Copy on Write Filesystem utilities (debug))

• btrfs-tools-udeb ()

cctools

• coop-computing-tools (cooperative computing tools)

• coop-computing-tools-dev (libraries and header files for coop-computing-tools)

• coop-computing-tools-doc (documentation for coop-computing-tools)

• python-workqueue (cooperative computing tools work queue Python bindings)

cde

• cde (package everything required to execute a Linux command on another computer)

cfflib

• python-cfflib (Multi-modal connectome and metadata management and integration)

chardet

• python-chardet (universal character encoding detector for Python2)

• python3-chardet (universal character encoding detector for Python3)

citeproc-py

• python-citeproc (Citation Style Language (CSL) processor for Python)

• python3-citeproc (Citation Style Language (CSL) processor for Python3)

cmtk

• cmtk (Computational Morphometry Toolkit)

cnrun

• cnrun-tools (NeuroML-capable neuronal network simulator (tools))

• libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))

• libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))

• lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))

condor

• htcondor (distributed workload management system)

• htcondor-dbg (distributed workload management system - debugging symbols)

• htcondor-dev (distributed workload management system - development files)

• htcondor-doc (distributed workload management system - documentation)

• libclassad-dev (HTCondor classads expression language - development library)

• libclassad8 (HTCondor classads expression language - runtime library)

connectome-workbench

• connectome-workbench (brain visualization, analysis and discovery tool)

• connectome-workbench-dbg (brain visualization, analysis and discovery tool – debug symbols)

connectomeviewer

• connectomeviewer (Interactive Analysis and Visualization for MR Connectomics)

contextlib2

• python-contextlib2 (Backport and enhancements for the contextlib module - Python 2.7)

• python3-contextlib2 (Backport and enhancements for the contextlib module - Python 3.x)

convert3d

• convert3d (tool(s) for converting 3D images between common file formats)

copyq

• copyq (Advanced clipboard manager with editing and scripting features)

• copyq-doc (Documentation and examples for CopyQ - HTML format)

• copyq-plugins (Plugins for CopyQ)

cython

• cython (C-Extensions for Python)

• cython-dbg (C-Extensions for Python - debug build)

datalad

• datalad (data files management and distribution platform)

• python3-datalad (data files management and distribution platform)

datalad-container

• datalad-container (DataLad extension for working with containerized environments)

dcm2niix

• dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)

dcmstack

• python3-dcmstack (DICOM to NIfTI conversion - python3 package)

debhelper

• debhelper (helper programs for debian/rules)

• libdebhelper-perl (debhelper perl modules)

debian-handbook

• debian-handbook (reference book for Debian users and system administrators)

debruijn

• debruijn (De Bruijn cycle generator)

dh-autoreconf

• dh-autoreconf (debhelper add-on to call autoreconf and clean up after the build)

dh-octave

• dh-octave (Debhelper-based infrastructure for building Octave add-on packages)

• dh-octave-autopkgtest (script for the automatic testing of Octave add-on packages)

dh-python

• dh-python (Debian helper tools for packaging Python libraries and applications)

• pybuild-plugin-autopkgtest (pybuild autopkgtest test runner (metapackage))

• pybuild-plugin-pyproject (Debian helper tools for packaging Python libraries using PEP517)

dicomnifti

• dicomnifti (converts DICOM files into the NIfTI format)

dipy

• python-dipy (Python library for the analysis of diffusion MRI datasets)

• python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)

• python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)

diskcache

• python3-diskcache (Python module for Disk and file backed persistent cache)

dmtcp

• dmtcp (Checkpoint/Restart functionality for Linux processes)

• dmtcp-dbg (Debug package for dmtcp)

docker-compose

• docker-compose (Punctual, lightweight development environments using Docker)

dockerpty

• python-dockerpty (Pseudo-tty handler for docker Python client (Python 2.x))

• python3-dockerpty (Pseudo-tty handler for docker Python client (Python 3.x))

double-conversion

• libdouble-conversion-dbg (routines to convert IEEE floats to and from strings (debugging symbols))

• libdouble-conversion-dev (routines to convert IEEE floats to and from strings (development files))

• libdouble-conversion1 (routines to convert IEEE floats to and from strings)

duecredit

• python3-duecredit (Publications (and donations) tracer)

dwz

• dwz (DWARF compression tool)

edac-utils

• edac-utils (report kernel-detected PCI and ECC RAM errors)

• libedac-dev (report kernel-detected PCI and ECC RAM errors)

• libedac1 (report kernel-detected PCI and ECC RAM errors)

• libedac1-dbg (report kernel-detected PCI and ECC RAM errors)

eeglab11

• eeglab11-sampledata (sample EEG data for EEGLAB tutorials)

• matlab-eeglab11 (electrophysiological data analysis)

exempi

• exempi (command line tool to manipulate XMP metadata)

• libexempi-dev (library to parse XMP metadata (Development files))

• libexempi3 (library to parse XMP metadata (Library))

fail2ban

• fail2ban (ban hosts that cause multiple authentication errors)

freeipmi

• freeipmi (GNU implementation of the IPMI protocol)

• freeipmi-bmc-watchdog (GNU implementation of the IPMI protocol - BMC watchdog)

• freeipmi-common (GNU implementation of the IPMI protocol - common files)

• freeipmi-ipmidetect (GNU IPMI - IPMI node detection tool)

• freeipmi-ipmiseld (GNU IPMI - IPMI node detection tool)

• freeipmi-tools (GNU implementation of the IPMI protocol - tools)

• libfreeipmi-dev (GNU IPMI - development package)

• libfreeipmi16 (GNU IPMI - libraries)

• libipmiconsole-dev (GNU IPMI - ipmiconsole development package)

• libipmiconsole2 (GNU IPMI - Serial-over-Lan library)

• libipmidetect-dev (GNU IPMI - ipmidetect development package)

• libipmidetect0 (GNU IPMI - IPMI node detection library)

• libipmimonitoring-dev (GNU IPMI - ipmimonitoring development package)

• libipmimonitoring5a (GNU IPMI - Sensor monitoring library)

fsl

• fsl (transitional dummy package)

• fsl-5.0 (transitional dummy package)

• fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)

• fsl-core (metapackage for the latest version of FSL)

fsl-eddy-nonfree

• fsl-5.0-eddy-nonfree (correcting eddy currents and movements in diffusion data)

fsleyes

• fsleyes (FSL image viewer)

fsleyes-props

• python-fsleyes-props (Python descriptor framework)

fsleyes-widgets

• python-fsleyes-widgets (Python descriptor framework)

fslmeta

• fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))

• fsl-complete (metapackage for the entire FSL suite (tools and data))

fslpy

• python-fsl (FSL Python library)

• python3-fsl (FSL Python library)

fslview

• fslview (viewer for (f)MRI and DTI data)

• fslview-doc (Documentation for FSLView)

gcalcli

• gcalcli (Google Calendar Command Line Interface)

gifticlib

• gifti-bin (tools shipped with the GIFTI library)

• libgiftiio-dev (IO library for the GIFTI cortical surface data format)

• libgiftiio0 (IO library for the GIFTI cortical surface data format)

git

• git (fast, scalable, distributed revision control system)

• git-all (fast, scalable, distributed revision control system (all subpackages))

• git-cvs (fast, scalable, distributed revision control system (cvs interoperability))

• git-daemon-run (fast, scalable, distributed revision control system (git-daemon service))

• git-daemon-sysvinit (fast, scalable, distributed revision control system (git-daemon service))

• git-doc (fast, scalable, distributed revision control system (documentation))

• git-el (fast, scalable, distributed revision control system (emacs support))

• git-email (fast, scalable, distributed revision control system (email add-on))

• git-gui (fast, scalable, distributed revision control system (GUI))

• git-man (fast, scalable, distributed revision control system (manual pages))

• git-mediawiki (fast, scalable, distributed revision control system (MediaWiki remote helper))

• git-svn (fast, scalable, distributed revision control system (svn interoperability))

• gitk (fast, scalable, distributed revision control system (revision tree visualizer))

• gitweb (fast, scalable, distributed revision control system (web interface))

git-annex

• git-annex-standalone (manage files with git, without checking their contents into git – standalone build)

git-annex-adapter

• python3-git-annex-adapter (call git-annex commands from within Python)

git-annex-metadata-gui

• git-annex-metadata-gui (graphical interface to the metadata functionality of git-annex)

git-annex-remote-rclone

• git-annex-remote-rclone (rclone-based git annex special remote)

git-hub

• git-hub (Git command line interface to GitHub)

glew

• glew-utils (OpenGL Extension Wrangler - utilities)

• libglew1.9 (OpenGL Extension Wrangler - runtime environment)

• libglew1.9-dbg (OpenGL Extension Wrangler (debugging symbols))

• libglew1.9-dev (OpenGL Extension Wrangler - development environment)

• libglewmx1.9 (OpenGL Extension Wrangler (Multiple Rendering Contexts))

• libglewmx1.9-dbg (OpenGL Extension Wrangler MX (debugging symbols))

• libglewmx1.9-dev (OpenGL Extension Wrangler MX - development environment)

glm

• libglm-dev (C++ library for OpenGL GLSL type-based mathematics)

• libglm-doc (documentation for the OpenGL Mathematics (GLM) library)

gmsl

• gmsl (extra functions to extend functionality of GNU Makefiles)

guacamole-client

• guacamole (HTML5 web application for accessing remote desktops)

• guacamole-tomcat (Tomcat-based Guacamole install with VNC support)

guacamole-server

• guacd (Guacamole proxy daemon)

• libguac-client-rdp0 (RDP support plugin for Guacamole)

• libguac-client-ssh0 (SSH support plugin for Guacamole)

• libguac-client-vnc0 (VNC support plugin for Guacamole)

• libguac-dev (Development headers for the core Guacamole library)

• libguac5 (Core Guacamole library used by guacd and client plugins)

h5py

• python-h5py (general-purpose Python interface to hdf5 (Python 2))

• python-h5py-dbg (debug extensions for h5py (Python 2))

• python-h5py-doc (documentation for h5py)

• python3-h5py (general-purpose Python interface to hdf5 (Python 3))

• python3-h5py-dbg (debug extensions for h5py (Python 3))

haskell-network-protocol-xmpp

• libghc-network-protocol-xmpp-dev (Haskell XMPP (Jabber) library)

• libghc-network-protocol-xmpp-doc (Haskell XMPP (Jabber) library; documentation; documentation)

• libghc-network-protocol-xmpp-prof (Haskell XMPP (Jabber) library; profiling libraries; profiling libraries)

haskell-optparse-applicative

• libghc-optparse-applicative-dev (utilities and combinators for parsing command-line options)

• libghc-optparse-applicative-doc (utilities and combinators for parsing command-line options; documentation)

• libghc-optparse-applicative-prof (utilities and combinators for parsing command-line options; profiling libraries)

hdmf

• python3-hdmf (Hierarchical Data Modeling Framework)

heudiconv

• heudiconv (DICOM converter with support for structure heuristics)

impressive

• impressive (PDF presentation tool with eye candies)

incf-nidash-oneclick

• incf-nidash-oneclick-clients (utility for pushing DICOM data to the INCF datasharing server)

indexed-gzip

• python-indexed-gzip (fast random access of gzip files in Python)

• python3-indexed-gzip (fast random access of gzip files in Python)

init-system-helpers

• dh-systemd (debhelper add-on to handle systemd unit files - transitional package)

• init-system-helpers (helper tools for all init systems)

insighttoolkit4

• insighttoolkit4-examples (Image processing toolkit for registration and segmentation - examples)

• insighttoolkit4-python (Image processing toolkit for registration and segmentation - Python bindings)

• libinsighttoolkit4-dbg (Debugging information for the Insight Toolkit)

• libinsighttoolkit4-dev (Image processing toolkit for registration and segmentation - development)

• libinsighttoolkit4.7 (Image processing toolkit for registration and segmentation - runtime)

ismrmrd

• ismrmrd-schema (ISMRM Raw Data format (ISMRMRD) - XML schema)

• ismrmrd-tools (ISMRM Raw Data format (ISMRMRD) - binaries)

• libismrmrd-dev (ISMRM Raw Data format (ISMRMRD) - development files)

• libismrmrd-doc (ISMRM Raw Data format (ISMRMRD) - documentation)

• libismrmrd1.3 (ISMRM Raw Data format (ISMRMRD) - shared library)

itksnap

• itksnap (semi-automatic segmentation of structures in 3D images)

jasp

• jasp (Bayesian statistics made accessible)

jdcal

• python-jdcal (Julian dates from proleptic Gregorian and Julian calendars)

• python3-jdcal (Julian dates from proleptic Gregorian and Julian calendars)

joblib

• python-joblib (tools to provide lightweight pipelining in Python)

• python3-joblib (tools to provide lightweight pipelining in Python)

json-tricks

• pypy-json-tricks (Python module with extra features for JSON files)

• python-json-tricks (Python module with extra features for JSON files)

• python3-json-tricks (Python module with extra features for JSON files)

klustakwik

• klustakwik (automatic sorting of the samples (spikes) into clusters)

lazyarray

• python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)

lda

• python-lda (Topic modeling with latent Dirichlet allocation for Python 3)

• python3-lda (Topic modeling with latent Dirichlet allocation)

libcgroup

• cgroup-bin (Tools to control and monitor control groups)

• libcgroup-dev (Development libraries to develop applications that utilize control groups)

• libcgroup1 (Library to control and monitor control groups)

• libpam-cgroup (PAM module to move a user session into a cgroup)

libfreenect

• freenect (library for accessing Kinect device – metapackage)

• libfreenect-bin (library for accessing Kinect device – utilities and samples)

• libfreenect-demos (library for accessing Kinect device – dummy package)

• libfreenect-dev (library for accessing Kinect device – development files)

• libfreenect-doc (library for accessing Kinect device – documentation)

• libfreenect0.5 (library for accessing Kinect device)

libgdf

• gdf-tools (IO library for the GDF – helper tools)

• libgdf-dev (IO library for the GDF – development library)

• libgdf0 (IO library for the GDF (general dataformat for biosignals))

• matlab-gdf (IO library for the GDF – Matlab interface)

• octave-gdf (IO library for the GDF – Octave interface)

libguac

• libguac-dev (Development headers for the core Guacamole library)

• libguac3 (Core Guacamole library used by guacd and client plugins)

libmialm

• libmialm-dev (Development files for the MIA landmark library)

• libmialm-doc (Documentation for the MIA landmark library)

• libmialm3 (Landmark handling for the MIA tool chain)

• libmialm3-dbg (Debug information for the MIA landmark library)

libqtpas

• libqt5pas-dev (Development files for Qt5Pas)

• libqt5pas1 (Qt5 interface bindings for Pascal)

libvistaio

• libvistaio-dev (Development files for the libvistaio library)

• libvistaio14 (Library for loading and storing various types of binary data)

• libvistaio14-dbg (Debug information for the libvistaio library)

matlab-support

• matlab-support (distro integration for local MATLAB installations)

• matlab-support-dev (helpers for packages building MATLAB toolboxes)

mdp

• python-mdp (Modular toolkit for Data Processing)

• python3-mdp (Modular toolkit for Data Processing)

melview

• fsl-melview (viewer for the output of FSL’s MELODIC)

mia

• libmia-2.0-8 (library for 2D and 3D gray scale image processing)

• libmia-2.0-8-dbg (Debug information for the MIA library)

• libmia-2.0-dev (library for 2D and 3D gray scale image processing, development files)

• libmia-2.0-doc (library for 2D and 3D gray scale image processing, documentation)

• mia-tools (Command line tools for gray scale image processing)

• mia-tools-dbg (Debugging information for the MIA command line tools)

• mia-tools-doc (Cross-referenced documentation of the MIA command line tools)

mialmpick

• mialmpick (Tools for landmark picking in 3D volume data sets)

• mialmpick-dbg (Debug information landmark picking tool mialmpick)

mpi4py

• python-mpi4py (bindings of the Message Passing Interface (MPI) standard)

• python-mpi4py-dbg (bindings of the MPI standard – debug symbols)

• python-mpi4py-doc (bindings of the MPI standard – documentation)

• python3-mpi4py (bindings of the Message Passing Interface (MPI) standard)

• python3-mpi4py-dbg (bindings of the MPI standard – debug symbols)

mriconvert

• mriconvert (medical image file conversion utility)

mricron

• mricron (magnetic resonance image conversion, viewing and analysis)

• mricron-data (data files for MRIcron)

• mricron-doc (data files for MRIcron)

mridefacer

• mridefacer (de-identification of MRI data)

mrtrix

• mrtrix (diffusion-weighted MRI white matter tractography)

• mrtrix-doc (documentation for mrtrix)

mrtrix3

• mrtrix3 (diffusion-weighted MRI white matter tractography)

• mrtrix3-doc (documentation for mrtrix3)

msgpack-python

• python-msgpack (Python implementation of MessagePack format)

• python3-msgpack (Python 3 implementation of MessagePack format)

mutagen

• python-mutagen (audio metadata editing library)

• python-mutagen-doc (audio metadata editing library - documentation)

• python3-mutagen (audio metadata editing library (Python 3))

mwrap

• mwrap (Octave/MATLAB mex generator)

ncdu

• ncdu (ncurses disk usage viewer)

neo

• python3-neo (Python IO library for electrophysiological data formats)

netselect

• netselect (speed tester for choosing a fast network server)

• netselect-apt (speed tester for choosing a fast Debian mirror)

neurodebian

• neurodebian (neuroscience-oriented distribution - repository configuration)

• neurodebian-archive-keyring (neuroscience-oriented distribution - GnuPG archive keys)

• neurodebian-desktop (neuroscience-oriented distribution - desktop integration)

• neurodebian-dev (neuroscience-oriented distribution - development tools)

• neurodebian-freeze (nd_freeze tool to freeze APT sources to use snapshots)

• neurodebian-popularity-contest (neuroscience-oriented distribution - popcon integration)

nibabel

• python-nibabel-doc (documentation for NiBabel)

• python3-nibabel (Python3 bindings to various neuroimaging data formats)

nifti2dicom

• nifti2dicom (convert 3D medical images to DICOM 2D series)

• nifti2dicom-data (data files for nifti2dicom)

• nifti2dicom-dbg (convert 3D medical images to DICOM 2D series (debug symbols))

• qnifti2dicom (convert 3D medical images to DICOM 2D series (gui))

nifticlib

• libnifti-dev (IO libraries for the NIfTI-1 data format)

• libnifti-doc (NIfTI library API documentation)

• libnifti2 (IO libraries for the NIfTI-1 data format)

• nifti-bin (tools shipped with the NIfTI library)

nilearn

• python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))

• python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))

nipy

• python-nipy-doc (documentation and examples for NiPy)

• python3-nipy (Analysis of structural and functional neuroimaging data)

• python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))

• python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))

nipype

• python-nipype-doc (Neuroimaging data analysis pipelines in Python3 – documentation)

• python3-nipype (Neuroimaging data analysis pipelines in Python3)

nitime

• python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)

• python3-nitime (timeseries analysis for neuroscience data (nitime))

nlopt

• libnlopt-dev (nonlinear optimization library – development package)

• libnlopt-guile0 (nonlinear optimization library – Guile bindings)

• libnlopt0 (nonlinear optimization library)

• octave-nlopt (nonlinear optimization library – GNU Octave package)

• python-nlopt (nonlinear optimization library – Python bindings)

nosexcover

• python-nosexcover (Add Cobertura-style XML coverage report to nose)

• python3-nosexcover (Add Cobertura-style XML coverage report to nose)

nuitka

• nuitka (Python compiler with full language support and CPython compatibility)

numdiff

• numdiff (Compare similar files with numeric fields)

numexpr

• python-numexpr (Fast numerical array expression evaluator for Python and NumPy)

• python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)

obs-studio

• libobs-dev (recorder and streamer for live video content (development files))

• libobs0 (recorder and streamer for live video content (shared library))

• obs-plugins (recorder and streamer for live video content (plugins))

• obs-studio (recorder and streamer for live video content)

odin

• libodin-dev (static libraries and header for ODIN sequences)

• mitools (view, convert and perform basic maths with medical image datasets)

• odin (develop, simulate and run magnetic resonance sequences)

openopt

• python-openopt (Python module for numerical optimization)

openpyxl

• python-openpyxl (Python module to read/write OpenXML xlsx/xlsm files)

• python3-openpyxl (Python 3 module to read/write OpenXML xlsx/xlsm files)

openstack-pkg-tools

• openstack-pkg-tools (Tools and scripts for building Openstack packages in Debian)

openwalnut

• libopenwalnut1 (Framework for multi-modal medical and brain data visualization)

• libopenwalnut1-dev (Development files for the OpenWalnut visualization framework)

• libopenwalnut1-doc (Developer documentation for the OpenWalnut visualization framework)

• openwalnut-modules (Loaders, algorithms and visualization modules for OpenWalnut)

• openwalnut-qt4 (Qt based user interface for OpenWalnut)

p7zip

• p7zip (7zr file archiver with high compression ratio)

• p7zip-full (7z and 7za file archivers with high compression ratio)

pandas

• python-pandas (data structures for “relational” or “labeled” data)

• python-pandas-doc (documentation and examples for pandas)

• python-pandas-lib (low-level implementations and bindings for pandas)

• python3-pandas (data structures for “relational” or “labeled” data - Python 3)

• python3-pandas-lib (low-level implementations and bindings for pandas - Python 3)

parallelpython

• python-pp (parallel and distributed programming toolkit for Python)

patool

• patool (command line archive file manager)

patsy

• python-patsy (statistical models in Python using symbolic formulas)

• python-patsy-doc (documentation and examples for patsy)

• python3-patsy (statistical models in Python using symbolic formulas)

pprocess

• python-pprocess (elementary parallel programming for Python)

props

• python-props (Python descriptor framework)

psignifit3

• python-pypsignifit (psychometric analysis of psychophysics data in Python)

psychopy

• psychopy (environment for creating psychology stimuli in Python)

psychtoolbox-3

• octave-psychtoolbox-3 (toolbox for vision research – Octave bindings)

• psychtoolbox-3-common (toolbox for vision research – arch/interpreter independent part)

• psychtoolbox-3-dbg (toolbox for vision research – debug symbols for binaries)

• psychtoolbox-3-lib (toolbox for vision research – arch-specific parts)

psychtoolbox-3-nonfree

• matlab-psychtoolbox-3 (toolbox for vision research – Matlab bindings)

• matlab-psychtoolbox-3-nonfree (toolbox for vision research – Matlab binary blobs)

• octave-psychtoolbox-3-nonfree (toolbox for vision research – Octave binary blobs)

pycharm-community-sloppy

• pycharm-community-sloppy (PyCharm IDE (sloppy packaging))

pydicom

• python-dicom (transitional package for python-pydicom)

• python-pydicom (DICOM medical file reading and writing (Python 2))

• python-pydicom-doc (DICOM medical file reading and writing (documentation))

• python3-dicom (transitional package for python3-pydicom)

• python3-pydicom (DICOM medical file reading and writing (Python 3))

pydot

• python-pydot (Python interface to Graphviz’s dot)

• python3-pydot (Python interface to Graphviz’s dot (Python 3))

pyentropy

• python-pyentropy (Python module for estimation information theoretic quantities)

pyepl

• python-pyepl (module for coding psychology experiments in Python)

• python-pyepl-common (module for coding psychology experiments in Python)

pygithub

• python3-github (Access the full Github API v3 from Python3)

pyglet

• python3-pyglet (cross-platform windowing and multimedia library (Python 3))

pymc

• python-pymc (Bayesian statistical models and fitting algorithms)

• python-pymc-doc (Bayesian statistical models and fitting algorithms)

pymvpa2

• python-mvpa2 (multivariate pattern analysis with Python v. 2)

• python-mvpa2-doc (documentation and examples for PyMVPA v. 2)

• python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)

pynifti

• python-nifti (Python interface to the NIfTI I/O libraries)

pynn

• python-pynn (simulator-independent specification of neuronal network models)

pynwb

• python3-pynwb (Python library for working with Neurodata in the NWB format)

pysurfer

• python-surfer (visualize Freesurfer’s data in Python)

pytables

• python-tables (hierarchical database for Python based on HDF5)

• python-tables-data (hierarchical database for Python based on HDF5 - test data)

• python-tables-dbg (hierarchical database for Python based on HDF5 (debug extension))

• python-tables-doc (hierarchical database for Python based on HDF5 - documentation)

• python-tables-lib (hierarchical database for Python based on HDF5 (extension))

• python3-tables (hierarchical database for Python3 based on HDF5)

• python3-tables-dbg (hierarchical database for Python 3 based on HDF5 (debug extension))

• python3-tables-lib (hierarchical database for Python3 based on HDF5 (extension))

pytest

• pypy-pytest (Simple, powerful testing in PyPy)

• python-pytest (Simple, powerful testing in Python)

• python-pytest-doc (Simple, powerful testing in Python - Documentation)

• python3-pytest (Simple, powerful testing in Python3)

pytest-localserver

• python-pytest-localserver (py.test plugin to test server connections locally (Python 2))

• python3-pytest-localserver (py.test plugin to test server connections locally (Python 3))

pytest-tornado

• python-pytest-tornado (py.test plugin to test Tornado applications)

• python3-pytest-tornado (py.test plugin to test Tornado applications (Python 3))

python-argcomplete

• python3-argcomplete (bash tab completion for argparse (for Python 3))

python-babel

• python-babel (tools for internationalizing Python applications - Python 2.x)

• python-babel-doc (tools for internationalizing Python applications - documentation)

• python-babel-localedata (tools for internationalizing Python applications - locale data files)

• python3-babel (tools for internationalizing Python applications - Python 3.x)

python-boto

• python-boto (Python interface to Amazon’s Web Services - Python 2.x)

• python3-boto (Python interface to Amazon’s Web Services - Python 3.x)

python-boto3

• python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)

• python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)

python-bz2file

• python-bz2file (Python library for reading and writing bzip2-compressed files)

• python3-bz2file (Python3 library for reading and writing bzip2-compressed files)

python-click

• python-click (Simple wrapper around optparse for powerful command line utilities - Python 2.7)

• python3-click (Simple wrapper around optparse for powerful command line utilities - Python 3.x)

python-deprecation

• python-deprecation (Library to handle automated deprecations - Python 2.x)

• python3-deprecation (Library to handle automated deprecations - Python 3.x)

python-docker

• python-docker (Python wrapper to access docker.io’s control socket)

• python3-docker (Python 3 wrapper to access docker.io’s control socket)

python-exif

• python-exif (Python library to extract Exif data from TIFF and JPEG files)

• python3-exif (Python library to extract Exif data from TIFF and JPEG files)

python-expyriment

• python-expyriment (Python library for cognitive and neuroscientific experiments)

python-fasteners

• python3-fasteners (provides useful locks - Python 3.x)

python-filelock

• python-filelock (platform independent file locking module (Python 2))

• python3-filelock (platform independent file locking module (Python 3))

python-funcsigs

• python-funcsigs (function signatures from PEP362 - Python 2.7)

• python-funcsigs-doc (function signatures from PEP362 - doc)

• python3-funcsigs (function signatures from PEP362 - Python 3.x)

python-future

• python-future (single-source support for Python 3 and 2 - Python 2.x)

• python-future-doc (Clean single-source support for Python 3 and 2 - doc)

• python3-future (Clean single-source support for Python 3 and 2 - Python 3.x)

python-git

• python-git-doc (Python library to interact with Git repositories - docs)

• python3-git (Python library to interact with Git repositories - Python 3.x)

python-gitdb

• python-gitdb (pure-Python git object database (Python 2))

• python3-gitdb (pure-Python git object database (Python 3))

python-httpretty

• python3-httpretty (HTTP client mock - Python 3.x)

python-humanize

• python-humanize (Python Humanize library (Python 2))

• python3-humanize (Python Humanize library (Python 3))

python-hypothesis

• pypy-hypothesis (advanced Quickcheck style testing library for PyPy)

• python-hypothesis (advanced Quickcheck style testing library for Python 2)

• python-hypothesis-doc (advanced Quickcheck style testing library (documentation))

• python3-hypothesis (advanced Quickcheck style testing library for Python 3)

python-jsmin

• python-jsmin (JavaScript minifier written in Python - Python 2.x)

• python3-jsmin (JavaScript minifier written in Python - Python 3.x)

python-mne

• python-mne (Python modules for MEG and EEG data analysis)

python-monotonic

• python-monotonic (implementation of time.monotonic() - Python 2.x)

• python3-monotonic (implementation of time.monotonic() - Python 3.x)

python-neuroshare

• python-neuroshare (Python interface and tools for Neuroshare)

• python-neuroshare-doc (Python interface and tools for Neuroshare)

python-packaging

• python-packaging (core utilities for python packages)

• python3-packaging (core utilities for python packages)

python-prov

• prov-tools (tools for prov)

• python-prov (W3C Provenance Data Model (Python 2))

• python-prov-doc (documentation for prov)

• python3-prov (W3C Provenance Data Model (Python 3))

python-psutil

• python-psutil (module providing convenience functions for managing processes)

• python3-psutil (module providing convenience functions for managing processes (Python3))

python-py

• pypy-py (Advanced Python development support library (PyPy))

• python-py (Advanced Python development support library (Python 2))

• python3-py (Advanced Python development support library (Python 3))

python-pydotplus

• python-pydotplus (interface to Graphviz’s Dot language - Python 2.7)

• python-pydotplus-doc (interface to Graphviz’s Dot language - doc)

• python3-pydotplus (interface to Graphviz’s Dot language - Python 3.x)

python-pyfakefs

• python3-pyfakefs (fake fs that mocks the Python file system modules - Python 3)

python-pygraphviz

• python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)

• python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))

• python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))

• python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))

• python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))

python-pyperclip

• python-pyperclip (Cross-platform clipboard module for Python)

• python3-pyperclip (Cross-platform clipboard module for Python3)

python-quantities

• python3-quantities (Library for computation of physical quantities with units, based on numpy)

python-rpaths

• python-rpaths-doc (documentation for rpaths)

• python3-rpaths (cross-platform path manipulation library for Python)

python-scrapy

• python-scrapy (Python web scraping and crawling framework)

• python-scrapy-doc (Python web scraping and crawling framework documentation)

python-setuptools

• pypy-pkg-resources (Package Discovery and Resource Access using pkg_resources)

• pypy-setuptools (PyPy Distutils Enhancements)

• python-pkg-resources (Package Discovery and Resource Access using pkg_resources)

• python-setuptools (Python Distutils Enhancements)

• python-setuptools-doc (Python Distutils Enhancements (documentation))

• python3-pkg-resources (Package Discovery and Resource Access using pkg_resources)

• python3-setuptools (Python3 Distutils Enhancements)

python-smmap

• python-smmap (pure Python implementation of a sliding window memory map manager)

• python3-smmap (pure Python implementation of a sliding window memory map manager)

python-tornado

• python-tornado (scalable, non-blocking web server and tools)

python-traits

• python-traits4 (Manifest typing and reactive programming for Python)

python-tz

• python-tz (Python version of the Olson timezone database)

python-urllib3

• python-urllib3 (HTTP library with thread-safe connection pooling for Python)

• python-urllib3-whl (HTTP library with thread-safe connection pooling)

• python3-urllib3 (HTTP library with thread-safe connection pooling for Python3)

python-w3lib

• python-w3lib (Collection of web-related functions for Python (Python 2))

• python3-w3lib (Collection of web-related functions for Python (Python 3))

python-werkzeug

• python-werkzeug (collection of utilities for WSGI applications)

• python-werkzeug-doc (documentation for the werkzeug Python library)

• python3-werkzeug (collection of utilities for WSGI applications)

python-whoosh

• python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))

• python-whoosh-doc (full-text indexing, search, and spell checking library (doc))

• python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))

python-wrapt

• python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)

• python-wrapt-doc (decorators, wrappers and monkey patching. - doc)

• python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)

python-xmp-toolkit

• python3-libxmp (Python3 library for XMP metadata)

• python3-libxmp-doc (Python library for XMP metadata - documentation)

pyxid

• python3-pyxid (interface for Cedrus XID and StimTracker devices)

rclone

• golang-github-ncw-rclone-dev (go source code of rclone)

• rclone (rsync for commercial cloud storage)

rdflib

• python-rdflib (Python library containing an RDF triple store and RDF parsers/serializers)

• python-rdflib-doc (Python library containing an RDF triple store […] (documentation))

• python-rdflib-tools (Python tools for converting to and from RDF)

• python3-rdflib (Python 3 library containing an RDF triple store and RDF parsers/serializers)

remake

• remake (GNU make fork with improved error reporting and debugging)

reprozip

• python3-reprozip (modules for the ReproZip packer)

• python3-reprozip-dbg (debug extensions for the ReproZip packer)

• reprozip (tool for reproducing scientific experiments (packer))

requests

• python-requests (elegant and simple HTTP library for Python2, built for human beings)

• python-requests-whl (elegant and simple HTTP library for Python, built for human beings)

• python3-requests (elegant and simple HTTP library for Python3, built for human beings)

rtfilter

• librtfilter-dev (realtime digital filtering library (development files))

• librtfilter1 (realtime digital filtering library)

• librtfilter1-dbg (realtime digital filtering library (debugging symbols))

s3cmd

• s3cmd (command-line Amazon S3 client)

scikit-learn

• python-sklearn (Python modules for machine learning and data mining)

• python-sklearn-doc (documentation and examples for scikit-learn)

• python-sklearn-lib (low-level implementations and bindings for scikit-learn)

• python3-sklearn (Python modules for machine learning and data mining - Python 3)

• python3-sklearn-lib (low-level implementations and bindings for scikit-learn - Python 3)

seaborn

• python-seaborn (statistical visualization library)

• python3-seaborn (statistical visualization library)

setuptools-scm

• python-setuptools-scm (blessed package to manage your versions by scm tags for Python 2)

• python3-setuptools-scm (blessed package to manage your versions by scm tags for Python 3)

sigviewer

• sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)

simplegeneric

• python-simplegeneric (Simple generic functions for Python)

singularity-container

• singularity-container (container platform focused on supporting “Mobility of Compute”)

six

• pypy-six (Python 2 and 3 compatibility library (PyPy interface))

• python-six (Python 2 and 3 compatibility library (Python 2 interface))

• python3-six (Python 2 and 3 compatibility library (Python 3 interface))

sparql-wrapper-python

• python-sparqlwrapper (SPARQL endpoint interface to Python)

• python3-sparqlwrapper (SPARQL endpoint interface to Python3)

sphinx

• python-sphinx (tool for producing documentation for Python projects)

sphinx-gallery

• python-sphinx-gallery (extension that builds an HTML gallery of examples from Python scripts)

• python-sphinx-gallery-doc (extension that builds an HTML gallery of examples from Python scripts (Doc))

• python3-sphinx-gallery (extension that builds an HTML gallery of examples from Python scripts (Python 3))

sphinx-rtd-theme

• python-sphinx-rtd-theme (sphinx theme from readthedocs.org (Python 2))

• python3-sphinx-rtd-theme (sphinx theme from readthedocs.org (Python 3))

spm8

• matlab-spm8 (analysis of brain imaging data sequences for Matlab)

• spm8-common (analysis of brain imaging data sequences)

• spm8-data (data files for SPM8)

• spm8-doc (manual for SPM8)

spyder

• python-spyderlib (python IDE for scientists)

• spyder (python IDE for scientists)

spykeutils

• python-spykeutils (utilities for analyzing electrophysiological data)

spykeviewer

• spykeviewer (graphical utility for analyzing electrophysiological data)

stabilitycalc

• stabilitycalc (evaluate fMRI scanner stability)

statsmodels

• python-statsmodels (Python module for the estimation of statistical models)

• python-statsmodels-doc (documentation and examples for statsmodels)

• python-statsmodels-lib (low-level implementations and bindings for statsmodels)

• python3-statsmodels (Python3 module for the estimation of statistical models)

• python3-statsmodels-lib (Python3 low-level implementations and bindings for statsmodels)

stimfit

• python-stfio (Python module to read common electrophysiology file formats.)

• stimfit (Program for viewing and analyzing electrophysiological data)

• stimfit-dbg (Debug symbols for stimfit)

svgtune

• svgtune (tool to generate a set of .svg files out of a single .svg file)

sympy

• isympy-common (Python shell for SymPy)

• isympy3 (Python3 shell for SymPy)

• python-sympy (Computer Algebra System (CAS) in Python)

• python-sympy-doc (Computer Algebra System (CAS) in Python - Documentation)

• python3-sympy (Computer Algebra System (CAS) in Python (Python3))

tigervnc

• tigervnc-common (Virtual network computing; Common software needed by clients and servers)

• tigervnc-scraping-server (Virtual network computing server software)

• tigervnc-standalone-server (Virtual network computing server software)

• tigervnc-viewer (Virtual network computing client software for X)

• tigervnc-xorg-extension (Virtual network computing server software)

tqdm

• python-tqdm (fast, extensible progress bar for Python 2)

• python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)

ubuntu-keyring

• ubuntu-keyring (GnuPG keys of the Ubuntu archive)

• ubuntu-keyring-udeb ()

utopia-documents

• utopia-documents (PDF reader that displays interactive annotations on scientific articles)

• utopia-documents-dbg (debugging symbols for utopia-documents)

vcr.py

• python-vcr (record and replay HTML interactions (Python library))

• python3-vcr (record and replay HTML interactions (Python3 library))

visionegg

• python-visionegg (Python library for 2D/3D visual stimulus generation)

vmri-nonfree

• virtual-mri-nonfree (Virtual Magnetic Resonance Imager)

vowpal-wabbit

• libvw-dev (fast and scalable online machine learning algorithm - development files)

• libvw0 (fast and scalable online machine learning algorithm - dynamic library)

• vowpal-wabbit (fast and scalable online machine learning algorithm)

• vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)

• vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)

vrpn

• libvrpn-dev (Virtual Reality Peripheral Network (development files))

• libvrpn0 (Virtual Reality Peripheral Network (client library))

• libvrpnserver0 (Virtual Reality Peripheral Network (server library))

• vrpn (Virtual Reality Peripheral Network (executables))

• vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))

vtk-dicom

• libvtk-dicom-java (DICOM for VTK - java)

• libvtk-dicom0.5 (DICOM for VTK - lib)

• libvtk-dicom0.5-dev (DICOM for VTK - dev)

• python-vtk-dicom (DICOM for VTK - python)

• vtk-dicom-tools (DICOM for VTK - tools)

xdffileio

• libxdffileio-dev (Library to read/write EEG data file formats (development files))

• libxdffileio0 (Library to read/write EEG data file formats)

• libxdffileio0-dbg (Library to read/write EEG data file formats (debugging symbols))

xlwt

• python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)

• python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)

• python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)

xppaut

• xppaut (Phase Plane Plus Auto: Solves many kinds of equations)

youtube-dl

• youtube-dl (downloader of videos from YouTube and other sites)

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