python-dipy – Python library for the analysis of diffusion MRI datasets¶
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DIPY is a software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging (dMRI) analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities. Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging.
Here are some of the highlights:
Reconstruction algorithms: CSD, DSI, GQI, DTI, DKI, QBI, SHORE and MAPMRI
Fiber tracking algorithms: deterministic and probabilistic
Native linear and nonlinear registration of images
Fast operations on streamlines (selection, resampling, registration)
Tractography segmentation and clustering
Many image operations, e.g., reslicing or denoising with NLMEANS
Estimation of distances/correspondences between streamlines and connectivity matrices
Interactive visualization of streamlines in the space of images
Distribution |
Base version |
Our version |
Architectures |
|---|---|---|---|
Debian GNU/Linux 10.0 (buster) |
0.14.0-1~nd100+1 |
i386, amd64, sparc, armel, ppc64el |
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Debian GNU/Linux 11.0 (bullseye) |
1.3.0-3 |
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Debian GNU/Linux 12.0 (bookworm) |
1.6.0-1 |
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Debian GNU/Linux 9.0 (stretch) |
0.14.0-1~nd90+1 |
i386, amd64, sparc, armel |
|
Debian testing (trixie) |
1.9.0-8 |
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Debian unstable (sid) |
1.10.0~rc1-1 |
0.14.0-1~nd+1 |
i386, amd64, sparc, armel |
Ubuntu 16.04 “Xenial Xerus” (xenial) |
0.10.1-1 |
0.14.0-1~nd16.04+1 |
i386, amd64, sparc, armel |
Ubuntu 18.04 “Bionic Beaver” (bionic) |
0.13.0-2 |
0.14.0-1~nd17.10+1+nd18.04+1 |
i386, amd64, sparc, armel |
Ubuntu 22.04 “Jammy Jellyfish” (jammy) |
1.4.1-1build1 |
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Ubuntu 24.04 “Noble Numbat” (noble) |
1.8.0-2ubuntu2 |