Packages for Magnetic Reasonance Imaging¶
- afni
afni (toolkit for analyzing and visualizing functional MRI data)
afni-common (miscellaneous scripts and data files for AFNI)
afni-dbg (debug symbols for AFNI)
afni-dev (header and static libraries for AFNI plugin development)
- caret
caret (Computerized Anatomical Reconstruction and Editing Toolkit)
- connectome-workbench
connectome-workbench (brain visualization, analysis and discovery tool)
connectome-workbench-dbg (brain visualization, analysis and discovery tool – debug symbols)
- connectomeviewer
connectomeviewer (Interactive Analysis and Visualization for MR Connectomics)
- dcm2niix
dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
- debruijn
debruijn (De Bruijn cycle generator)
- dicomnifti
dicomnifti (converts DICOM files into the NIfTI format)
- fsl
fsl (transitional dummy package)
fsl-5.0 (transitional dummy package)
fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
fsl-core (metapackage for the latest version of FSL)
- fslview
fslview (viewer for (f)MRI and DTI data)
fslview-doc (Documentation for FSLView)
- heudiconv
heudiconv (DICOM converter with support for structure heuristics)
- itksnap
itksnap (semi-automatic segmentation of structures in 3D images)
- mriconvert
mriconvert (medical image file conversion utility)
- mricron
mricron (magnetic resonance image conversion, viewing and analysis)
mricron-data (data files for MRIcron)
mricron-doc (data files for MRIcron)
- mridefacer
mridefacer (de-identification of MRI data)
- nibabel
python-nibabel-doc (documentation for NiBabel)
python3-nibabel (Python3 bindings to various neuroimaging data formats)
- nifticlib
libnifti-dev (IO libraries for the NIfTI-1 data format)
libnifti-doc (NIfTI library API documentation)
libnifti2 (IO libraries for the NIfTI-1 data format)
nifti-bin (tools shipped with the NIfTI library)
- nipy
python-nipy-doc (documentation and examples for NiPy)
python3-nipy (Analysis of structural and functional neuroimaging data)
python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))
python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))
- nipype
python-nipype-doc (Neuroimaging data analysis pipelines in Python3 – documentation)
python3-nipype (Neuroimaging data analysis pipelines in Python3)
- nitime
python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
python3-nitime (timeseries analysis for neuroscience data (nitime))
- openmeeg
libopenmeeg-dev (openmeeg library – development files)
libopenmeeg1 (library for solving EEG and MEG forward and inverse problems)
openmeeg-tools (openmeeg library – command line tools)
python-openmeeg (openmeeg library – Python bindings)
- pydicom
python-dicom (transitional package for python-pydicom)
python-pydicom (DICOM medical file reading and writing (Python 2))
python-pydicom-doc (DICOM medical file reading and writing (documentation))
python3-dicom (transitional package for python3-pydicom)
python3-pydicom (DICOM medical file reading and writing (Python 3))
- pymvpa2
python-mvpa2 (multivariate pattern analysis with Python v. 2)
python-mvpa2-doc (documentation and examples for PyMVPA v. 2)
python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)
- pynifti
python-nifti (Python interface to the NIfTI I/O libraries)
- pyxnat
python-pyxnat (Interface to access neuroimaging data on XNAT servers)
- spm8
matlab-spm8 (analysis of brain imaging data sequences for Matlab)
spm8-common (analysis of brain imaging data sequences)
spm8-data (data files for SPM8)
spm8-doc (manual for SPM8)
- voxbo
voxbo (processing, statistical analysis, and display of brain imaging data)